Alignment of alleles: Charr (Salvelinus alpinus) IGHV8S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   V   L   T   Q   A   E   Q   S   V   Q   G   T   P   G   G   S   L   K
  AJ000362,IGHV8S1*01           CAG GTC GTA CTC ACA CAG GCT GAA CAG TCA GTC CAG GGG ACC CCC GGG GGA TCC CTC AAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   T   C   A   C   S   G   F   T   L   S   S   Y   R                   M   H
  AJ000362,IGHV8S1*01           CTC ACA TGT GCC TGC AGT GGA TTT ACT CTA AGC AGC TAC AGA ... ... ... ... ATG CAC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   A   P   G   K   G   L   E   W   I   I   Y   Y   H   S   D   T
  AJ000362,IGHV8S1*01           TGG ATC CGG CAA GCA CCT GGA AAA GGA CTT GAA TGG ATA ATT TAC TAT CAT TCT GAC ACT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 D   K               S   N   A   Q   V   V   Q       G   R   F   T   A   S   K
  AJ000362,IGHV8S1*01           GAC AAG ... ... ... AGC AAT GCC CAG GTA GTA CAG ... GGC CGA TTC ACT GCA TCA AAG

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D           S   T   N   F   Y   L   H   M   S   Q   L   K   P   E   D   S   A
  AJ000362,IGHV8S1*01           GAC ... ... AGC ACT AAT TTC TAT CTG CAC ATG AGC CAG TTG AAG CCA GAG GAC TCT GCA

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 L   Y   Y   C   A   S
  AJ000362,IGHV8S1*01           TTG TAT TAC TGT GCT AGT  #c
#c: rearranged cDNA

This alignement has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 03/07/2003
Author: Nathalie Bosc